SOAPsnp Tool name | SOAPsnp |
---|
URL | http://soap.genomics.org.cn/soapsnp.html |
---|
Important features | Mainly used for re-sequencing that can assemble consensus sequence for the genome on the known reference. Can identify SNPs. |
---|
Citations | Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009 Jun;19(6): 1124-32. Epub 2009 May 6. PubMed PMID: 19420381; PubMed Central PMCID: PMC2694485. |
---|
Year of publication | 2009 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | SNP discovery |
---|
Category | Downloadable |
---|
License | |
---|
Status | |
---|
Input file format | SOAPalign output |
---|
Output file format | .glfv2, gpfv2 |
---|
Operating system | Linux/Unix 64bit |
---|
Operating language | C++ |
---|
Platform | Illumina/Solexa |
---|
Maintained by | Beijing Genomics Institute
|
---|
Downloadable file format | |
---|
Submission file format | |
---|
| |